Question: retrieve orthologous sequences from human fasta file
0
gravatar for jfertaj
4.1 years ago by
jfertaj90
United Kingdom
jfertaj90 wrote:

Hi all,

I would like to ask if it would be possible to retrieve orthologous sequences to a human SNP flanking sequences automatically using python, perl or R.

Basically I have a list of 4 human SNPs and I have the flanking sequences (60 kb each side) for each of them. I would like to obtain the orthologous sequences for several species (not only primates). I would like to learn a method than can be used for any fasta sequence not only for SNP flanking sequences

Many thanks in advance

Juan

orthologous snp sequence • 1.1k views
ADD COMMENTlink modified 4.0 years ago by Biostar ♦♦ 20 • written 4.1 years ago by jfertaj90

This is an old thread but may be useful: What Is The Best Method To Find Orthologous Genes Of A Species?

ADD REPLYlink modified 4.1 years ago • written 4.1 years ago by geek_y9.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 658 users visited in the last hour