Question: RefFlat file ---> sort proteins by function
0
gravatar for Baptiste
3.7 years ago by
Baptiste90
Singapore
Baptiste90 wrote:

Hello everyone,

I am currently in internship, and honestly, "the more I learn, the more I realize how much I don't know". There is so many websites and documentations that I am getting confused.
I have a refFlat file, looks like this:

TMEM11    NM_003876    chr17    -    21041854    21058500    21042228    21058057    2    21041854,21057995,    21042745,21058500,

I would like to know if there is a function in R or file which I could sort the proteins in the refFlat by categories.
So I want to sort all the protein in the RefFlat file and gather by function. (like COG, each COG have a key letter which represents the function of the protein).
So I am not interested by the protein itself but the function/category to which it belongs.
 

And in the end, the main idea is to have my results like this:
category A (maybe translation)--> 45 proteins
category B (lipid metabolism)--> 34 proteins

and so on...

Thank you very much.
Baptiste

function cog protein refflat R • 1.3k views
ADD COMMENTlink written 3.7 years ago by Baptiste90
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