How to get TCGA sample list containing samples covering user defined platforms
1
0
Entering edit mode
8.7 years ago
VM ▴ 10

Hi,

​I would like to download the cancer samples from TCGA which covers the 3 platforms say for example namely (methylation) Infinium HumanMethylation450, (CNV), Genome-Wide Human SNP Array 6.0 and (gene expression) Illumina HiSeq 2000 RNA Sequencing is there anyway to see set of TCGA sample id covering all the platforms I am interested in?

Best,
Vijaya

SNP methylation RNA-seq TCGA • 2.4k views
ADD COMMENT
0
Entering edit mode
8.7 years ago
VM ▴ 10

I figured it out myself!, after making desired selection in TCGA Home > Download Data > Data Matrix. I just need to check Only show samples with data available for all columns

ADD COMMENT

Login before adding your answer.

Traffic: 1537 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6