Question: How to generate bam files for Quiver
5.0 years ago by
Biomonika (Noolean) ♦ 3.1k
State College, PA, USA
Biomonika (Noolean) ♦ 3.1k wrote:
I want to use Quiver as a standalone tool to polish my final assembly produced by different set of tools. What is recommended way to generate bam file that Quiver needs (maybe blasr, bwa mem)? Thanks.
$ quiver -j8 aligned_reads.bam \ > -r path/to/lambda.fasta \ > -o variants.gff -o consensus.fasta
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