Question: Marmoset Mrna Details Via Ucsc Mysql Database
gravatar for Chami
8.1 years ago by
Colombo, Sri Lanka.
Chami0 wrote:

I currently access the UCSC 'refFlat' table to extract human mRNA details namely ; mRNA name, Start coordinate and End coordinate.

I want the same information regarding the Marmoset mRNAs.

My primary need is to BLAST a sequence segment , get its coordinate and see whether a mRNA is present in the location.

Thanks in advance.

mrna • 1.4k views
ADD COMMENTlink modified 2.3 years ago by Biostar ♦♦ 20 • written 8.1 years ago by Chami0

I believe Marmoset is called calJac3 at UCSC. You could probably access it in the same way as human. So, I'm not sure what your question actually is. Could you clarify?

ADD REPLYlink written 8.1 years ago by Sean Davis25k
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