I am studying how capture probe properties affect read depth in targeted exon sequencing. I am using data from the 1000 Genomes Project. My specific question: which exome sequencing/exon capture BAM files were generated using Nimblegen probes, and which used Agilent probes?
I've read their FTP tutorial, their paper, and the supplementary info, and I've spent a lot of time on the FTP site. The closest I found was this README, which says which centers use which probe sets. (I can't find which ceters made which BAMs, though.)
In general, switching between their paper, supplementary materials, README files, BAS files and tutorials makes it easy to leave gaps. This is a second-priority question, but in the future, is there a single resource that I can go to for technical questions about the 1000 Genomes project?
Thanks for your help.