Question: bacterial protein data from NCBI
0
gravatar for akhilvbioinfo
3.5 years ago by
akhilvbioinfo130
India, chennai
akhilvbioinfo130 wrote:

I want to do a local blast using all the bacterial protein data from NCBI . Is there any way to download all the data from NCBI? 

sequencing blast tool gene genome • 1.4k views
ADD COMMENTlink modified 3.5 years ago by SES8.1k • written 3.5 years ago by akhilvbioinfo130
1
gravatar for 5heikki
3.5 years ago by
5heikki8.1k
Finland
5heikki8.1k wrote:

I would recommend that you just download the nr database with update_blastdb.pl and then pipe blastdbcmd output where you filter all bacterial GIs from nr to blastdb_aliastool. All these tools ship with blast. The taxonomy ID for Bacteria is "2". See here.

ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by 5heikki8.1k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 900 users visited in the last hour