Question: Association analysis of big-data in R/PLINK
0
gravatar for deepue
4.6 years ago by
deepue120
Finland
deepue120 wrote:

Hello,

I would like to know the association between the snps and the clinical variables available. For this, I have to do association for all possible combinations of one snp- one variable. I have come across an option in Plink for this. But to follow this process for 100+ snps and 150+ variables is cumbersome. Would you suggest any other option in plink/R/any other software ?

Thanks

snp plink R • 1.8k views
ADD COMMENTlink modified 4.6 years ago by alesssia560 • written 4.6 years ago by deepue120
1
gravatar for alesssia
4.6 years ago by
alesssia560
London, UK
alesssia560 wrote:

You can write a script to run PLINK over all your variables. Otherwise tools as MERLIN do it for you (but you will need to slightly modify the PLINK format).

ADD COMMENTlink modified 4 months ago by RamRS26k • written 4.6 years ago by alesssia560
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