Question: Association analysis of big-data in R/PLINK
gravatar for deepue
3.8 years ago by
deepue110 wrote:


I would like to know the association between the snps and the clinical variables available. For this, I have to do association for all possible combinations of one snp- one variable. I have come across an option in Plink for this. But to follow this process for 100+ snps and 150+ variables is cumbersome. Would you suggest any other option in plink/R/any other software ?


snp plink R • 1.5k views
ADD COMMENTlink modified 3.8 years ago by alesssia520 • written 3.8 years ago by deepue110
gravatar for alesssia
3.8 years ago by
London, UK
alesssia520 wrote:

You can write a script to run PLINK over all your variables. Otherwise tools as MERLIN ( do it for you (but you will need to slightly modify the PLINK format).

ADD COMMENTlink written 3.8 years ago by alesssia520
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1825 users visited in the last hour