Association analysis of big-data in R/PLINK
1
0
Entering edit mode
9.0 years ago
deepue ▴ 160

Hello,

I would like to know the association between the snps and the clinical variables available. For this, I have to do association for all possible combinations of one snp- one variable. I have come across an option in Plink for this. But to follow this process for 100+ snps and 150+ variables is cumbersome. Would you suggest any other option in plink/R/any other software ?

Thanks

R plink snp • 2.7k views
ADD COMMENT
1
Entering edit mode
9.0 years ago
alesssia ▴ 580

You can write a script to run PLINK over all your variables. Otherwise tools as MERLIN do it for you (but you will need to slightly modify the PLINK format).

ADD COMMENT

Login before adding your answer.

Traffic: 1813 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6