assigning cases and controls in plink
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6.0 years ago
nchuang ▴ 260

Quick question.

I am trying to assign cases in my study for association test with "--make-pheno cases.list '*'" option but program keeps telling me there's less than two phenotypes. My command line is:

plink --bfile cases --make-pheno cases.list '*' --assoc

My cases.list file has two columns with FID and IID like this:

18175   1
19233   1
19302   1
19342   1
19367   1
19427   1
19477   1

I am using plink 1.9 

 

plink • 1.7k views
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