Transcription Factor (TF) sequence extraction +/- 2000 of Arabidopsis thaliana
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8.7 years ago
alpha09 ▴ 10

I have Arabidopsis thaliana transcription factors and I want to extract sequence +/- 2000. Is there any tool OR way to extract quickly?

Kindly tell me the tool name or any website.

I tried different databases of Arabidopsis thaliana.

next-gen genome gene R • 1.7k views
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I have Arabidopsis thaliana transcription factors.

In which form do you have them? Do you have list of names? Coordinates? Motifs?

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Yes I have names and motif.

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8.7 years ago
UnivStudent ▴ 430

You can find the resource you need using the upstream/downstream sequence tool using TAIR IDs (https://www.arabidopsis.org/tools/bulk/sequences/index.jsp). Same thing using the Phytozome BioMart (which is probably accessible in R)

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