Question: How can I download GTF files from Biomart?
0
gravatar for Chong Tang
5.1 years ago by
Chong Tang90
Belgium
Chong Tang90 wrote:

Hello,

I'm wondering how can I download a GTF file from Biomart? I hope this file only containing exons information.

rna-seq biomart gtf • 2.6k views
ADD COMMENTlink written 5.1 years ago by Chong Tang90

Are you  familiar with R?

There are a package for biomart, that you can download a lot of stuff from biomart database.

Also, another package, genomic features can be useful as well.

http://bioconductor.org/packages/release/bioc/manuals/GenomicFeatures/man/GenomicFeatures.pdf

http://bioconductor.org/packages/release/bioc/html/biomaRt.html

ADD REPLYlink written 5.1 years ago by tiago2112871.2k

Thanks, I will try.

ADD REPLYlink written 5.1 years ago by Chong Tang90
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