Question: GSE experiment has two platforms, how to find GSM files specific to one platform without using GEOMetadb
1
gravatar for grokaine
4.1 years ago by
grokaine20
Germany
grokaine20 wrote:

How to list the GSM files specific to one GPL number and to one GSE ID?

I can do this with GEOMetadb but it seems offhand, can't it be done from GEOQuery?

geoquery R • 1.8k views
ADD COMMENTlink modified 22 months ago by Sean Davis25k • written 4.1 years ago by grokaine20
0
gravatar for Sean Davis
22 months ago by
Sean Davis25k
National Institutes of Health, Bethesda, MD
Sean Davis25k wrote:

GEOquery takes care of this for you by returning a list of two ExpressionSets (when two platforms are involved). You can interrogate those objects to get the GSMs for each platform using sampleNames, for example.

ADD COMMENTlink written 22 months ago by Sean Davis25k
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