MSA INDEL Realigner
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7.3 years ago
Coryza ▴ 430

Hi all,

Does someone know if there's a tool that is able to realign INDELs based on MSA (preferably clustalw/clustalo) output; similar as to what GATK does on BAM files?

Thanks!

indels realign MSA • 1.9k views
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7.3 years ago
h.mon 34k

Mafft has an option to realign particular regions, but I don't how it will perform at realigning indels.

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Hi - I've looked into your suggestions and it seems that it's exactly doing as how I would want it to do.

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