Question: MSA INDEL Realigner
0
gravatar for Coryza
3.7 years ago by
Coryza380
Netherlands
Coryza380 wrote:

Hi all,

Does someone know if there's a tool that is able to realign INDELs based on MSA (preferably clustalw/clustalo) output; similar as to what GATK does on BAM files?

 

Thanks!

 

realign msa indels • 1.2k views
ADD COMMENTlink modified 2.8 years ago by Biostar ♦♦ 20 • written 3.7 years ago by Coryza380
2
gravatar for h.mon
3.7 years ago by
h.mon25k
Brazil
h.mon25k wrote:

Mafft has an option to realign particular regions, but I don't how it will perform at realigning indels. 

ADD COMMENTlink written 3.7 years ago by h.mon25k

Hi - I've looked into your suggestions and it seems that it's exactly doing as how I would want it to do. 

ADD REPLYlink modified 3.7 years ago • written 3.7 years ago by Coryza380
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