I have generated clustal alignment files which show a single small aligned region of about 2-25 bases. Can we parse the clustal file using biopython in a way that in output it only shows those 25 aligned bases.
Not sure what you mean... give a example please of how it is now, and how you would like to see it.
This is how it looks currently (1) and I want the output (2)
better show some alignment data and also how you want the output. Seems possible with simple script, if I understand properly.
Sure you can --> Biopython CookBook, section 6.4.1. ;)
And yes, it's blank.
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