parsing a multiple sequence alignment file
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7.3 years ago

Hi,

I have generated clustal alignment files which show a single small aligned region of about 2-25 bases. Can we parse the clustal file using biopython in a way that in output it only shows those 25 aligned bases.

alignment • 3.3k views
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Not sure what you mean... give a example please of how it is now, and how you would like to see it.

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(1)

This is how it looks currently (1) and I want the output (2)

(2)

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It's blank

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better show some alignment data and also how you want the output. Seems possible with simple script, if I understand properly.

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7.3 years ago
glihm ▴ 650

Hello there,

Sure you can --> Biopython CookBook, section 6.4.1. ;)

And yes, it's blank.

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