Question: parsing a multiple sequence alignment file
0
gravatar for imaditi1987
4.8 years ago by
United States
imaditi19870 wrote:

Hi,

 

I have generated  clustal alignment files which show a single small aligned region of about 2-25 bases. Can we parse the clustal  file using biopython in a way that in output it only shows those  25 aligned bases.

alignment • 2.0k views
ADD COMMENTlink modified 4.8 years ago by glihm620 • written 4.8 years ago by imaditi19870

Not sure what you mean... give a example please of how it is now, and how you would like to see it.

ADD REPLYlink written 4.8 years ago by Coryza390

better show some alignment data and also how you want the output. Seems possible with simple script, if I understand properly.

ADD REPLYlink written 4.8 years ago by venu6.6k
0
gravatar for imaditi1987
4.8 years ago by
United States
imaditi19870 wrote:

(1)

This is how it looks currently (1) and I want the output (2)

(2)

ADD COMMENTlink modified 3 months ago by RamRS27k • written 4.8 years ago by imaditi19870
1

It's blank

ADD REPLYlink written 4.8 years ago by Coryza390
0
gravatar for glihm
4.8 years ago by
glihm620
France
glihm620 wrote:

Hello there, 

sure you can --> Biopython CookBook, section 6.4.1. ;)


And yes, it's blank. 

ADD COMMENTlink written 4.8 years ago by glihm620
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