Hi community,
I have ChIP-seq data from different histone marks and I think I can get the insertion sites of a trangene by clipping out the sequences from the extremes of the transgene. I have been trying to do it by mapping the transgene promoter using bowtie and trying to get the sequences, but it didn't work out. I did 50bp sequencing single strand.
Any ideas?
Thanks,
Sergio
Thanks! That is a good start with. I will try.