Similar posts • Search »

• Funnel plot with Egger regression test, using R
  I would like to make a funnel plot with Egger regression test. On the x-axis the mean difference ...
• R Plot: Plotting range of negative and positive values in different color
  Hello all, This could be a trivial query but I am very new to R. I have data in two columns (Col...
• Plot multiple R empricial distributions with different X axis on the same plot
  Hi, I am facing a problem on which i have to plot three empirical distributions in R with the fu...
• Plot minor allele frequency distribution in R?
  Hi, I used PLINK (--freq) to get the minor allele frequencies for all SNPs in my GWAS. I would l...
• R ggplot Align Y-Axis on multiple graphs
  Hello I used ggarrange to create this plot, and I would like to align the y axis so that the y ax...
• Heatmap Using R, With Special Conditions !!!
  This dataset is for a specific disease-gene-test results. The dataset goes like this. | Test | ...
• R: scaling axis for different limits in hist
  I am plotting several frequency plots using `hist` in R. For different plots, there is a differe...
• Range line chart with breaks
  I have a dataset of this kind. These represents start and stop positions in chromosome. I need to...
• How to interpret and trim this plots?
  hello everyone I am running denovo rnaseq experiment at quality control step. I can’t interpret a...
• Correlating multiple CuffDiff outputs?
  I have two sets of CuffDiff outputs, set up like this: CuffDiff 1: Sample 1a vs. Sample 1b Cuff...
• Help With The Dnacopy Number Package In R
  Dear All, I am using the Varscan 2 for my experiments to understand the variants and mutational ...
• Suggestion for circlize package in R for plotting the datasets
  Hi All, I have large data set with methylation values ranging from 0-1. The data contains around...
• Circos -- Mapping Tiles to Y axis
  Hello! I am trying to use the Circos package to achieve two things on one plot track: 1) I have...
• Calculate Pairwise Wilcox.Test For Several Categories And Plot Significance Into A Boxplot With Ggplot2
  I have an R dataset that looks pretty much like this one from diamonds: diamonds2 = subset(diamo...
• Funnel plot for meta-analysis of Bland-Altman studies using R
  I would like to make a funnel plot for a meta-analysis of Bland-Altman studies, with R regression...
• Empty y-axis when plotting deeptools computeMatrix mat file.
  I generated the image using plotProfile deeptools command and it has no scale on the y-axis altho...
• Alternate colors in R based on a factor value
  I'm looking at heterozygosity in windows across the genome. I have a value for each window and I ...
• Plotting CpG methylation
  Hello Everyone I am new to NGS and trying to plot a Genomic landscape having information of CpG ...
• Only show every nth axis tick marks in ggplot2?
  I am able to group the dots by assigning my categorical data specific x- and y-values with empty ...
• What the heck is going on with this DESeq2 MA Plot?
  Hello, I'm getting a very strange MA plot, despite following the DESeq2 instructions. Effective...
• ggplot second y-axis: how to specify a secondary axis if I don't want to scale my second y variable
  Hi All, I'm a beginner with ggplot and I have a simple but specific problem. Unfortunately, I ca...
• Visualizing a bigwig ChIP-seq file over a region determined by a bed ChIP-seq file
  Hi everyone, I have two ChIP-seq files. One is a bed ChIP-seq file for protein X. The second is ...
• Reorder by genes, but plot x-axis as chromosomes
  Dear All, I am using ggplot2's generate plots for my RNASeq data. I would like to plot the gen...