Entering edit mode
9.2 years ago
zizigolu
★
4.3k
hi,
i am uploading a fastq file in galaxy but it is lasting for hours and still waiting, do know you the reason or solution please?
Which Galaxy instance are you trying to upload it to? Beware there are user data quotas on http://usegalaxy.org - see also their dedicated Q&A site: https://biostar.usegalaxy.org/
im using ribo-galaxy
http://ribogalaxy.ucc.ie/ directs user queries to their forum at http://gwips.ucc.ie/Forum/forumdisplay.php?fid=24 - I suggest asking there.
How big are your fastq files? Considering that I was answering your other thread, I guess you are trying to perform fastQC? They have a standalone programme and it is rather easy to use. You can download it here: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
no thanks, actually advisor asked me to try tophat because im with eukaryotes, i don know if tophat will work with ribo-seq also or not, anyway the fastq file i am uploading is 2 gb
If you have the linux system, you can download topHat here: https://ccb.jhu.edu/software/tophat/index.shtml
However, I am not sure if it will work for ribo-seq
thank you Sam