I multiple samples for which I have WGBS and RNA-seq data. The data is in the form of .bed files , .bam files etc.
I want to visually inspect the effect of methylation on exon inclusion/exclusion How do I do this ?
Do I have to use the .bedgraph files of methylation and expression data for the samples and then follow it up with inspection of read coverage or is there any other method of doing this?
Thanks in advance for any help.