Question: can i use tophat for ribo-seq data sets
0
gravatar for F
3.4 years ago by
F3.2k
Iran
F3.2k wrote:

hey biostars,

can i use tophat for ribo-seq data sets??? 

thank you

alignment tophat ribo-seq • 982 views
ADD COMMENTlink modified 5 days ago by Biostar ♦♦ 20 • written 3.4 years ago by F3.2k
2
gravatar for Devon Ryan
3.4 years ago by
Devon Ryan87k
Freiburg, Germany
Devon Ryan87k wrote:

Yes, ribo-seq is just a specific kind of RNAseq, RNAseq data will have spliced alignments, and tophat2 is a splicing aware aligner.

ADD COMMENTlink written 3.4 years ago by Devon Ryan87k
Thanks you very much Devon
ADD REPLYlink written 3.4 years ago by F3.2k
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