How to check the reads coverage of an area in ExAC, ESP6500, and 1000Genomes

Question

[mavershang]

Hi there, I want to check the reads coverage of several areas in ExAC, ESP6500, and 1000Genomes. Does these public DB provide DP/nt or similar data?

Thanks!

Answer 1

[Pierre Lindenbaum]

EVS data : page http://evs.gs.washington.edu/EVS/ / Download : ESP6500SI-V2.GRCh38-liftover.coverage.all_sites.txt.tar.gz "(sequencing coverage data for every site in our targets) "

Answer 2

[Vivek]

Coverage metrics for ExAC: ftp://ftp.broadinstitute.org/pub/ExAC_release/release0.3/coverage/

You can query the files using Tabix.