Is there an alternative to Cytoscape software for building graphs from microarray data?

Question

[vassialk]

Is there an alternative to Cytoscape software for building graphs from the microarray data?

Answer 1

[Jean-Karim Heriche]

You can use any number of other graph software as long as you can put your microarray data in a supported format. Examples are: BioLayout Express, gephi, GraphViz (with perl API).
 

EDIT: Since this has resurfaced, I'll add the igraph package for R.

Answer 2

[1234anjalianjali1234]

yes, you can use "NetworkAnalyst" which is designed to support integrative analysis of gene expression data through statistical, visual and network-based approaches.click to open network analyst

Answer 3

[Manu Prestat]

ggnet2 a network visualization with ggplot2 (for R).

Answer 4

[Benn]

Or use R, since most analyses of microarrays are done in R: keep it in R. In R you can use e.g., Rgraphviz and graph packages.

Answer 5

[pengchy]

Hi, you can try R, with the help of the book Statistical Analysis of Network Data with R

[e.rempel]

This link looks very suspicious to me.