Question: different outputs from miRDeep
1
gravatar for priscilaneuberndeoliveira
4.4 years ago by
Brazil

Hi everybody,

Please, I´m trying to run DEseq analysis for miRNA data and  need to know what is the difference between the miRDeep outputs, as follow:

miRNAs_expressed_all_samples_17_06_2015_t_16_36_38.csv
miRNAs_expressed_all_samples_17_06_2015_t_17_00_14.csv
miRNAs_expressed_all_samples_17_06_2015_t_17_01_51.csv
miRNAs_expressed_all_samples_17_06_2015_t_17_01_58.csv
miRNAs_expressed_all_samples_18_06_2015_t_14_45_50.csv
miRNAs_expressed_all_samples_18_06_2015_t_15_29_57.csv
miRNAs_expressed_all_samples_18_06_2015_t_15_30_09.csv
miRNAs_expressed_all_samples_18_06_2015_t_15_37_19.csv
miRNAs_expressed_all_samples_27-03-15.csv

Thanks in advance, ;)

 

mirdeep output deseq mirna • 930 views
ADD COMMENTlink modified 4.4 years ago by andrew.j.skelton735.9k • written 4.4 years ago by priscilaneuberndeoliveira20
1
gravatar for andrew.j.skelton73
4.4 years ago by
London
andrew.j.skelton735.9k wrote:

is this miRDeep2? 

It's been a while since I've used it, but as far as I'm aware you can't do whole experiment functions, but rather do things on a sample by sample basis. 

You've not explained your experiment at all, to give context to the filenames you provided. 

ADD COMMENTlink written 4.4 years ago by andrew.j.skelton735.9k
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