Question: Bug: for R ChAMP package
2
gravatar for Shicheng Guo
3.2 years ago by
Shicheng Guo7.1k
Shicheng Guo7.1k wrote:

I think I found a bug in the R package of "ChAMP". Even In its latest version, this bug were still existed there. As the following code shown in line 237 of function champ.lasso, 

   myDf <- data.frame(myDf, dmr.beta.means[,22:24])  # 

Actually, I think it should be 

   myDf <- data.frame(myDf, dmr.beta.means[,17:19])  # 

That's my opinion, I have contact the authors, However, there is no any response for long time. Is there any other friend found this problem/bug?  

 

A: Package can be found here: http://www.bioconductor.org/packages/devel/bioc/html/ChAMP.html

 

champ bug • 1.2k views
ADD COMMENTlink modified 3.1 years ago • written 3.2 years ago by Shicheng Guo7.1k

Please post this on the bioconductor support site.

ADD REPLYlink written 3.2 years ago by Devon Ryan86k
1

it is very interesting. bioconductor support site use same frame of the web building with biostars. Do they have same CEO or CTO?

ADD REPLYlink written 2.7 years ago by Shicheng Guo7.1k
1

The framework for the site is an open source project that a number of sites use (there's also a neurostars and a swedish bioinformatics site that use the same framework). There are no shared people between the two sites that I know of (this one is run by Istvan, the bioconductor site is probably run by the bioconductor core team (I assume).

ADD REPLYlink written 2.7 years ago by Devon Ryan86k
1

Hey Devon, Just wondering how to get the source of the framework like biostars, bioconductor support site.

ADD REPLYlink written 2.7 years ago by Shicheng Guo7.1k
1

It's on github :)

ADD REPLYlink modified 2.7 years ago • written 2.7 years ago by Devon Ryan86k
2
gravatar for champ450k
3.2 years ago by
champ450k20
European Union
champ450k20 wrote:

Hi Shicheng,

Thank you for your question. This update has been submitted and should be available from Bioconductor by the end of the week.

Best wishes

Tiffany

 

ADD COMMENTlink written 3.2 years ago by champ450k20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1736 users visited in the last hour