Cluego network containing high-Pvalue terms; showing genes

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8.6 years ago

jennifer.goldman.mcgill • 0

Hello,

I have run an analysis in Cluego+Cluepedia with thousands of genes. I made sure that in CluePedia options, I selected 1000 Genes per term visualization threshold. I would like to extract the 20 pathway terms with the smallest P-value and show the genes associated with those terms for a figure. I can 'show all genes' for the original network of thousands of genes, but once I 'make a new network' with the selected smallest P-value terms, I can no longer visualize the associated genes. Can someone advise me?

Thanks a million,
Jennifer

cytoscape cluepedia cluego • 2.7k views

ADD COMMENT • link updated 19 months ago by Ram 43k • written 8.6 years ago by jennifer.goldman.mcgill • 0

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Or maybe there is another Cluego plugin which would be more suitable for this problem?

ADD REPLY • link updated 19 months ago by Ram 43k • written 8.6 years ago by jennifer.goldman.mcgill • 0

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