Hi all, I advanced using ADMIXTURE after using Plink and I have got K=5, so I ploted the data with R using col=5. I get the barplot with each bar representing an individual but how can I recognize the color label such as the red color for example and/or which population? because the *.5.Q file just has row or column for the proportions and each individual. Thank you.
Question: ADMIXTURE and R, color meaning on barplot in studing population ancestry, K value
2.9 years ago by
dirranrak • 10
dirranrak • 10 wrote:
ADD COMMENT • link •
2.8 years ago by
Zev.Kronenberg ♦ 11k
Zev.Kronenberg ♦ 11k wrote:
I just finished writing an set of functions for admixture plotting:
after sourcing the file point the R function at the directory containing the *.Q and *.fam
to access subplot 5 :
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