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Recent Replies
Comment: interpretartion of a vcf file
by
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yes if there is more than one sample genotyped.
Comment: interpretartion of a vcf file
by
samuelkalandarov2002
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Is it typical to observe such a profile in the context of diploid organism ?
Answer: Plots for DNA methylation data
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Basti
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Yes you can use ggplot2 to create your own plots from a table of results from a differential methylation analysis. You just need to adapt a…
Comment: Heatmap and rna-seq
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This forum is not dedicated to this type of request, there are many online tutorials for creating heatmaps accessible with simple internet …
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Download the CPC2 tool supported by python 3 from here [https://github.com/gao-lab/CPC2_standalone/releases/tag/v1.0.1][1].
Then follow …
Comment: Redirection of Duplicate PMIDs
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let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
Comment: Redirection of Duplicate PMIDs
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I was able to come up with a workaround using the requests library:
import requests
pmid = 30134295
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Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
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Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
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More than likely not since the database query seems to work for the redirected PMID but not the original.
$ esearch -db pubmed -query …
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Blast showed PDB: 8J07_n9(human) as best template with 62.99%.
I also used swissmodel to model the protein and it showed:
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by
Sd
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Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
Comment: How to slice a gvcf file with tabix?
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> What is your suggestion to run GenomicsDBImport efficiently?
call the GVCF by slices eg: chr1:1000000-2000000<br>
run GenomicsDBImport …
Comment: How to slice a gvcf file with tabix?
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Sd
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I want to run gatk `GenomicsDBImport` tool to build a GenomicsDB. I want to slice it to reduce the computation time since I have 1300 gvcf …
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