Hi frineds,
I would like to do local blastx against some databases with the XML format output to import them into Blast2go software, I know blasting with this output format is really time-consuming. Could you please share your helpful tips to do such a blast at a more less time?
Thanks
If there are known nearest species, you can reduce your database also. You still might lose a bit of info, but would still get quick and reliable results as long as you have well annotated species in the database.