Is there a database linking cell lines and mutations?
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7.2 years ago
joedever42 ▴ 20

Hi,

I am trying to find a good solution for linking together information about

  1. cell lines
  2. mutations

Ideally I would need a database which will tell me:

  1. all mutations for a given cell line
  2. all cell lines with a specific mutation

If there anything already available off the shelf?

If not, which databases could I try to bash together to get what I need?

variants annotations cell-lines database • 7.3k views
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Entering edit mode
7.2 years ago
arno.guille ▴ 400

Hi,

http://www.cbioportal.org/ contains NCI-60 Cell Lines (NCI, Cancer Res. 2012) and Cancer Cell Line Encyclopedia (Novartis/Broad, Nature 2012) dataset with mutation data.

Hope this helps

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Thank you, it's one hour that I seek, your link helps me a lot.

Romain (sorry for my bad English)

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