Rnaseq calibration dataset
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7.1 years ago
Raygozak ★ 1.4k

HI, i know that there is the SRA for RNASeq datasets, but is there a dataset including scripts for which i could replicate the results and be certain that i'm not doing anything wrong in my rnaseq pipeline?

The description in most papers is too hand wavy and you need a lucky strike to reproduce it.

Thanks

RNA-Seq dataset • 1.5k views
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7.1 years ago
Ido Tamir 5.2k

There is the SEQC with uses human brain?/liver? RNA-seq standards, and there is a complete pipeline in the repository: https://bitbucket.org/soccin/seqc

paper: http://www.genomebiology.com/2013/14/9/R95

I think they used a subset of this (1 Tb of data): http://bioconductor.org/packages/release/data/experiment/html/seqc.html

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7.1 years ago
Raygozak ★ 1.4k

Just for reference I happened to find another dataset from Drosophila RNASeq. This is a simulated one.

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32038

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