Question: coderet: How to match a protein sequence to its cds sequence?
0
gravatar for Eliad
3.4 years ago by
Eliad50
NIBN, BGU, Israel
Eliad50 wrote:

I used coderet to extract the cds and protein sequences from a gbff file.

The output sequences are indexed, but the numbers don't match between the two outputs.

Therefore I can't match each protein sequence to its cds (nucleotide) sequence.

How can I overcome this problem?

gbk gbff coderet • 950 views
ADD COMMENTlink modified 3.4 years ago by Michael Dondrup45k • written 3.4 years ago by Eliad50
0
gravatar for Michael Dondrup
3.4 years ago by
Bergen, Norway
Michael Dondrup45k wrote:

Try exonerate with model protein2genome ?

ADD COMMENTlink written 3.4 years ago by Michael Dondrup45k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2150 users visited in the last hour