Question: coderet: How to match a protein sequence to its cds sequence?
0
gravatar for Eliad
3.9 years ago by
Eliad50
NIBN, BGU, Israel
Eliad50 wrote:

I used coderet to extract the cds and protein sequences from a gbff file.

The output sequences are indexed, but the numbers don't match between the two outputs.

Therefore I can't match each protein sequence to its cds (nucleotide) sequence.

How can I overcome this problem?

gbk gbff coderet • 1.1k views
ADD COMMENTlink modified 3.9 years ago by Michael Dondrup46k • written 3.9 years ago by Eliad50
0
gravatar for Michael Dondrup
3.9 years ago by
Bergen, Norway
Michael Dondrup46k wrote:

Try exonerate with model protein2genome ?

ADD COMMENTlink written 3.9 years ago by Michael Dondrup46k
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