I am facing some problems in understanding of parameters given in APPENDIX A: example.config on SOAPdenovo-Trans site (http://soap.genomics.org.cn/SOAPdenovo-Trans.html). I have converted one SRA file to Fastq format (http://www.ncbi.nlm.nih.gov/sra/SRX099032[accn]). After use of SRA toolkit I have got a single fastq file for paired reads. Now I am bit confuse about which parameter I should have to use weather (p=/path/**LIBNAMEA**/pairs_in_one_file.fa) or (q=/path/**LIBNAMEA**/fastq_read_single.fq.). I would be very grateful if anyone could suggest me solution to get rid of this problem.