Question: SRA to fastq
0
gravatar for anjanaram1
2.3 years ago by
anjanaram170
United States
anjanaram170 wrote:

is there some way to convert SRA to fastq? im on a windows system and the sra toolkit is not working on my system.

sequencing next-gen fastq sra • 924 views
ADD COMMENTlink modified 9 months ago by arunprasanna8320 • written 2.3 years ago by anjanaram170

You can try compiling the SRA toolkit under cygwin (didn't try, caveat emptor).

ADD REPLYlink written 2.3 years ago by vladimir.gritsenko70
3
gravatar for James Ashmore
2.3 years ago by
James Ashmore2.3k
UK/Edinburgh/MRC Centre for Regenerative Medicine
James Ashmore2.3k wrote:

You could upload your SRA files to Galaxy and use the SRA to FASTQ converter, however I'd strongly recommend you try to get the SRA toolkit working on your Windows machine.

ADD COMMENTlink written 2.3 years ago by James Ashmore2.3k
2
gravatar for Being Bioinformatician
2.3 years ago by
India
Being Bioinformatician110 wrote:

At first check your system specification . Download SRA toolkits accordingly(32 bits/ 64 bits) 

That might solve the problem

ADD COMMENTlink written 2.3 years ago by Being Bioinformatician110
0
gravatar for arunprasanna83
9 months ago by
arunprasanna8320 wrote:

From SRA toolkit => "./fastq-dump SRA* "

ADD COMMENTlink written 9 months ago by arunprasanna8320
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