Question: Read Orientations in IGV view of Bisulfite Sequencing
0
gravatar for DVA
4.4 years ago by
DVA530
United States
DVA530 wrote:

I'm kinda new to the bisulfite mode feature in IGV - I wonder if anyone here knows what determines the gray (5'-3') and green (3'-5') orientations when load a sam file to IGV. It does not seems to be explained on their official website. Is the orientation still fully determined by the flag number, like in normal sequencing cases please? 

Thank you!

igv bisulfite sequencing • 1.4k views
ADD COMMENTlink modified 4.3 years ago by vassialk190 • written 4.4 years ago by DVA530
0
gravatar for vassialk
4.3 years ago by
vassialk190
Belarus
vassialk190 wrote:

Try other viewers like Ugene, Galaxy, CLC, GeneousPro

ADD COMMENTlink written 4.3 years ago by vassialk190
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