Question: Window size and strigency in Dotplot
gravatar for D H
4.0 years ago by
D H0
United States
D H0 wrote:


I'm trying to generate a dot plot for the alignment of two sequences.

Can any one tell me what's the criterion to select window size and stringency?

Does the identity score ( output of BLASt) between the sequences help to choose these values?

Thank you.

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