Window size and strigency in Dotplot
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Entering edit mode
7.7 years ago
D H ▴ 10

Hello!!

I'm trying to generate a dot plot for the alignment of two sequences.

Can any one tell me what's the criterion to select window size and stringency?

Does the identity score (output of BLAST) between the sequences help to choose these values?

Thank you.

dot-plot BLAST • 3.4k views
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