Question: List Of Known Cancer Resources
5
gravatar for Wayne
7.9 years ago by
Wayne1.0k
United States
Wayne1.0k wrote:

I am looking to compile a list of resources that provide associations between point mutations, deletions, genes...etc and cancer. Cosmic is great for this but I am looking for additional resources of a similar concept. Aside from downloading all of TCGA and variant calling on this list does anyone know of online resources that provide a cosmic type database? Any help would be greatly appreciated thanks !!

gene mutation cancer • 2.8k views
ADD COMMENTlink modified 7.6 years ago by B. Arman Aksoy1.2k • written 7.9 years ago by Wayne1.0k

How about OMIM?

ADD REPLYlink written 7.9 years ago by Dpsguy140
2
gravatar for Larry_Parnell
7.9 years ago by
Larry_Parnell16k
Boston, MA USA
Larry_Parnell16k wrote:

I know of no one-stop shop where you will find everything from genes, variants and chromosomal aberrations all associated with cancer. Cancer is quite broad - which type(s) or all are of interest to you? Do you need to retain that the association is to a specific cancer?

One place to look for SNP-cancer associations is the GWAS catalog at NHGRI. KEGG has pathways for 16 different cancers - a source for genes to add to your list. Documentation on NCI's cancer Gene Index is here.

Here is a start. If other sources of info/data come to mind, I will list them later.

At this link is a review of chromosomal translocations and gene fusions in cancer.

ADD COMMENTlink modified 7.9 years ago • written 7.9 years ago by Larry_Parnell16k
2
gravatar for Dpsguy
7.9 years ago by
Dpsguy140
Dpsguy140 wrote:

How about OMIM?

ADD COMMENTlink written 7.9 years ago by Dpsguy140
1
gravatar for Ben Lange
7.9 years ago by
Ben Lange190
Minneapolis, MN
Ben Lange190 wrote:

A few more links: http://ghr.nlm.nih.gov/condition http://www.cancer.gov/cancertopics/types/alphalist http://www.mycancergenome.org

ADD COMMENTlink written 7.9 years ago by Ben Lange190
1
gravatar for Mary
7.9 years ago by
Mary11k
Boston MA area
Mary11k wrote:

This question might also have stuff that's useful to you.

But also keep an eye on the IGCG.org site. You can get some interesting things out of mining their BioMart if you are up for that. I've seen some pretty good data there.

ADD COMMENTlink modified 7 weeks ago by RamRS24k • written 7.9 years ago by Mary11k
1
gravatar for B. Arman Aksoy
7.9 years ago by
B. Arman Aksoy1.2k
New York, NY
B. Arman Aksoy1.2k wrote:

You will probably find Regulome Explorer very useful for obtaining/browsing cancer related association data.

ADD COMMENTlink written 7.9 years ago by B. Arman Aksoy1.2k
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