Best tool for Quality Assessment for Next Generation Sequencing Data?
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5.7 years ago

Which is the best best tool for quality assessment for next generation sequencing data?

ngs sequencing data quality • 2.2k views
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5.7 years ago
glihm ▴ 630

If you want to analyze the quality from your fastq files from NGS sequencing, take a look to FastQC. Efficient and clear reports. You can also use it from command line in customized pipelines.

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5.7 years ago
Martombo ★ 2.7k

Have a look at RSeQC as well, it mainly evaluates the quality of mapping and gene coverage rather than reads quality.

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I did not know this one, thank you a lot for this link Martombo.

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