Question: Best tool for Quality Assessment for Next Generation Sequencing Data?
1
gravatar for Abdul Rafay Khan
4.1 years ago by
Karachi, PK
Abdul Rafay Khan1.0k wrote:

Which is the best best tool for quality assessment for next generation sequencing data?

sequencing quality ngs data • 1.7k views
ADD COMMENTlink modified 4.1 years ago by Martombo2.5k • written 4.1 years ago by Abdul Rafay Khan1.0k
0
gravatar for glihm
4.1 years ago by
glihm600
France
glihm600 wrote:

If you want to analyze the quality from your fastq files from NGS sequencing, take a look to FastQC. Efficient and clear reports. You can also use it from command line in customized pipelines.

ADD COMMENTlink written 4.1 years ago by glihm600
0
gravatar for Martombo
4.1 years ago by
Martombo2.5k
Seville, ES
Martombo2.5k wrote:

Have a look at RSeQC as well, it mainly evaluates the quality of mapping and gene coverage rather than reads quality.

ADD COMMENTlink written 4.1 years ago by Martombo2.5k

I did not know this one, thank you a lot for this link Martombo.

ADD REPLYlink written 4.1 years ago by glihm600
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