Question: Are KEGG XML (KGML) files missing from website?
0
gravatar for jeremy.cox.2
3.6 years ago by
jeremy.cox.290
United States
jeremy.cox.290 wrote:

Hello,

I am interested in KEGG pathway ko01100.  I want to get the KGML version so I can use KeggSCAPE with Cytoscape.

I cannot get an appopriate KGML file to download.

Am I doing something wrong?  Perhaps this is a temporary problem with the site?

 

DETAILS

This download link works 

http://www.genome.jp/kegg-bin/download?entry=hsa00020&format=kgml

 

These links do not work.  I.e. they return an empty result.

http://www.genome.jp/kegg-bin/download?entry=map01100&format=kgml

http://www.genome.jp/kegg-bin/download?entry=ko01100&format=kgml

 

Which is very weird, because these links demonstrate that there is very much a graph tied to these 

http://rest.kegg.jp/get/ko01100/image

http://rest.kegg.jp/get/map01100/image

kegg kgml • 2.2k views
ADD COMMENTlink modified 3.6 years ago by 5heikki8.4k • written 3.6 years ago by jeremy.cox.290
2
gravatar for 5heikki
3.6 years ago by
5heikki8.4k
Finland
5heikki8.4k wrote:

http://rest.kegg.jp/get/ko01100/kgml works

ADD COMMENTlink written 3.6 years ago by 5heikki8.4k
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