Question: (Closed) How to convert a bam file into tsv file format?
0
gravatar for malikbashirkhan2
3.6 years ago by
Pakistan
malikbashirkhan20 wrote:

Hi every one...

i just wants to convert a bam file into tsv (tab seperated value) file format.

i new to bioinformatics.

bioinformatic • 2.2k views
ADD COMMENTlink modified 3.6 years ago by Alex Reynolds28k • written 3.6 years ago by malikbashirkhan20

Please do not repost a closed  question because you didn't like the comments you got.

ADD REPLYlink written 3.6 years ago by Michael Dondrup46k

Hello malikbashirkhan2!

We believe that this post does not fit the main topic of this site.

as I said... use samtools

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 3.6 years ago by Michael Dondrup46k
0
gravatar for Alex Reynolds
3.6 years ago by
Alex Reynolds28k
Seattle, WA USA
Alex Reynolds28k wrote:

BED is tab-delimited. You could use bam2bed:

$ bam2bed < reads.bam > reads.bed
ADD COMMENTlink modified 3.6 years ago • written 3.6 years ago by Alex Reynolds28k

plz elaborate it...?

ADD REPLYlink written 3.6 years ago by malikbashirkhan20

plz try something for yourself!

ADD REPLYlink written 3.6 years ago by Michael Dondrup46k

i have tried alot but cant successfull then i started to take help.

ADD REPLYlink written 3.6 years ago by malikbashirkhan20
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