Question: Chip-Seq Datasets For Cancer Genome Samples?
3
gravatar for Ahdf-Lell-Kocks
7.9 years ago by
Ahdf-Lell-Kocks1.6k
Ahdf-Lell-Kocks1.6k wrote:

Are there any publicly available Chip-seq datasets for cancer genome samples? I've seen this paper:

Genome-wide Profiling of Chromatin Signatures Reveals Epigenetic Regulation of MicroRNA Genes in Colorectal Cancer

They did H3K4me3, H3K27me3, H3K79me2 for colorectal cancer samples, but I can't find the fastq files in the public read archives.

chip-seq cancer • 3.7k views
ADD COMMENTlink written 7.9 years ago by Ahdf-Lell-Kocks1.6k
4
gravatar for Rory
7.9 years ago by
Rory40
Rory40 wrote:

This one has ChIP-seq data for ER binding in 20 breast cancer tumors, with BAM files in GEO:

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10730.html

ADD COMMENTlink written 7.9 years ago by Rory40
2
gravatar for Pedrosaurio
7.9 years ago by
Pedrosaurio90
Pedrosaurio90 wrote:

Looking around the SRA can be useful.

Here you have many datasets, not only including Chip-seq for colorectal cancer

http://www.ncbi.nlm.nih.gov/sra?term=%20Colorectal%20Cancer

ADD COMMENTlink written 7.9 years ago by Pedrosaurio90
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