I have assigned KEGG ids for my newly sequenced protein sequences, using Using Kegg/Kaas, sow i have a list of IDs , how do i assign them pathway maps . i need to know which of the genes(proteins) is in what family
I solved this by using GhostKOALA.
Just need to provide your query amino acid sequences in FASTA format and speficy which KEGG GENES database file to be searched. You will get an email when your results are ready. On the results, if you go to "reconstruct pathway" it will tell you how many proteins match to each family and also which of the genes is in each family. Hope it helps!