Question: How to perform phylogenetic Tree construction using R-package (ape)
2
gravatar for sunilthorat
3.9 years ago by
sunilthorat20
India
sunilthorat20 wrote:

Dear All, I am new to R and I want to construct phylogenetic tree using either APE or PHANGORN. Can anybody please help me how to do that from the scratch. Thanks in Advance.

Sunil

R • 18k views
ADD COMMENTlink modified 3.9 years ago by samuelmiver420 • written 3.9 years ago by sunilthorat20

What have you tried?  Where did you get stuck?  

ADD REPLYlink written 3.9 years ago by Sean Davis25k

Hi, 

This may help if your new to phylogenetic reconstruction in general:

http://www.mdpi.com/2079-3197/3/2/177

 

ADD REPLYlink written 3.9 years ago by moranr250
3
gravatar for samuelmiver
3.9 years ago by
samuelmiver420
Centre for Genomic Regulation (Barcelona, Spain)
samuelmiver420 wrote:

The first result googling "ape r phylogeny tutorial" seems to show how to do phylogenetic trees from scratch:

http://www.phytools.org/eqg/Exercise_3.2/

ADD COMMENTlink written 3.9 years ago by samuelmiver420

Thanks Samuel,

This will help me to learn more and understand APE.

Sunil

ADD REPLYlink written 3.9 years ago by sunilthorat20

Happy to help!

ADD REPLYlink written 3.9 years ago by samuelmiver420
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