Question: Blast Tabular to XML
0
gravatar for moranr
4.5 years ago by
moranr260
Ireland
moranr260 wrote:

Hi, 

I have a rather large Blast completed, with the results in tabular text format. I need to generate the results in xml format to use with software. I know I can specify this in the blasting options, but to redo the blast is a lot of computation power that I wish not to 'waste' if possible.

Thanks.

blast convert xml • 1.7k views
ADD COMMENTlink modified 4.5 years ago by michael.ante3.6k • written 4.5 years ago by moranr260
1
gravatar for michael.ante
4.5 years ago by
michael.ante3.6k
Austria/Vienna
michael.ante3.6k wrote:

Try this one:A: Convert Blast Output Into Blast-Xml

ADD COMMENTlink written 4.5 years ago by michael.ante3.6k
1

Generating authentic blast xml output from tabular output is impossible because some of the information, like e.g. the actual alignments, is not present in the latter.

ADD REPLYlink modified 4.5 years ago • written 4.5 years ago by 5heikki8.7k

This comment is the correct answer to my question. Thanks.

ADD REPLYlink written 4.5 years ago by moranr260
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