How to perform phylogenetic Tree construction using R-package (ape)

Question

[sunilthorat]

Dear All, I am new to R and I want to construct phylogenetic tree using either APE or PHANGORN. Can anybody please help me how to do that from the scratch. Thanks in Advance.

Sunil

[moranr]

Hi,

This may help if your new to phylogenetic reconstruction in general: http://www.mdpi.com/2079-3197/3/2/177

[Sean Davis]

What have you tried? Where did you get stuck?

Answer 1

[samuelmiver]

The first result googling "ape r phylogeny tutorial" seems to show how to do phylogenetic trees from scratch:

http://www.phytools.org/eqg/Exercise_3.2/

[sunilthorat]

Thanks Samuel,

This will help me to learn more and understand APE.

Sunil

[samuelmiver]

Happy to help!