Entering edit mode
8.5 years ago
assembly.bfx1
•
0
Hi Dr, Vandervalk,
I like to do my denovo assembly with your AByss tool, I have installed it, but I think there is a problem in configuration as I didn't see the PATH, so may be that is the reason I couldn't execute.
I got google sparsehash as directed to have the root privilege:
wget http://google-sparsehash.googlecode.com/files/sparsehash-1.11.tar.gz
and I unpacked. Then in sparsehash-1.11 dir I downloaded AByss:
wget http://www.bcgsc.ca/downloads/abyss/abyss-1.9.0.tar.gz
Although it was connected but as didn't get response, I just downloaded ABySS in my directory:
tar -zxf/home/mydir/abyss-1.9.0.tar.gz
and I unpacked, when I see abyss-1.9.0
in the dir
Next, I compiled by going to abyss-1.9.0 dir:
./configure && make
./configure CPPFLAGS=-I/usr/local/include