I have problem with quantitative trait association (plink).I used the following command to run this test: " ./plink --file file_1 --assoc " .I am getting sample.assoc file which is not the output.output file looks something like this:
CHR SNP BP A1 F_A F_U A2 CHISQ P OR
1 rs10458597 564621 T 0.012 NA C NA NA NA
1 rs12565286 721290 C 0.02846 NA G NA NA NA
1 rs12082473 740857 A 0.01181 NA G NA NA NA
in place of "NA" there should be numerical values which is not in this case.
Thanks in advance