Question: Abyss unitigs filtering
gravatar for Damian Kao
5.0 years ago by
Damian Kao15k
Damian Kao15k wrote:

Does abyss do any kind of filtering when producing the initial unitigs?

If we have a highly heterozygous organism and a genomic locus was assembled as two contigs representing a pair of highly heterozygous alleles, will that be reflected in the unitigs?

Will I see two unitigs that should represent a single genetic loci (perhaps align well to each other with high identity)?

Or are some of these regions binned as the bubble or indel intermediate files?

abyss assembly • 1.1k views
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