Tools to compute the partition function of RNA secondary structure with pseudoknots

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8.6 years ago

wyj.jackson ▴ 20

I know that NUPACK can compute the partition function of RNA secondary structure with pseudoknots, but NUPACK cannot take non AUGC bases. I need a tool that can take non AUGC bases as input and also can compute the partition function of RNA secondary structure. Thanks in advance:)

sequence RNA-Seq nupack • 1.5k views

ADD COMMENT • link updated 10 months ago by Ram 43k • written 8.6 years ago by wyj.jackson ▴ 20

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I digged into the NUPACK package and changed it to what I want. If anyone wants the changed code, please let me know:)

ADD REPLY • link 8.5 years ago by wyj.jackson ▴ 20

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