Question: Tools to compute the partition function of RNA secondary structure with pseudoknots
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gravatar for wyj.jackson
4.8 years ago by
United States
wyj.jackson0 wrote:

I know that NUPACK can compute the partition function of RNA secondary structure with pseudoknots, but NUPACK cannot take non AUGC bases. I need a tool that can take non AUGC bases as input and also can compute the partition function of RNA secondary structure. Thanks in advance:)

rna-seq tool sequence • 1.1k views
ADD COMMENTlink modified 4.7 years ago by Biostar ♦♦ 20 • written 4.8 years ago by wyj.jackson0

I digged into the NUPACK package and changed it to what I want. If anyone wants the changed code, please let me know:)

ADD REPLYlink modified 4.8 years ago • written 4.8 years ago by wyj.jackson0
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