I want to remove some sequences from a fasta file based on a sequence IDs txt file. I have known that a available python script filter_fasta.py) can be used to do this, while the installation of this package filter_fasta.py is one of scripts of QIIME suite, this package need real 64-bit machine, while all of my computers are 32-bit) is so complex. So I want to know if other script can be used.
sequence IDs file
I want to remove A and B sequences from fasta file.
Thanks for your help!