Entering edit mode
7.5 years ago
Ginsea Chen ▴ 130
I want to remove some sequences from a fasta file based on a sequence IDs txt file. I have known that a available python script (
filter_fasta.py) can be used to do this, while the installation of this package (
filter_fasta.py is one of scripts of QIIME suite, this package need real 64-bit machine, while all of my computers are 32-bit) is so complex. So I want to know if other script can be used.
>A ATGCGGCGCGAGAGA >B AGCTCGATCGATACGTAG >C AGCTAAGCTAGATAGCTAG
sequence IDs file
I want to remove A and B sequences from fasta file. Thanks for your help!
duplicate of How To Remove Certain Sequences From A Fasta File ( but exclude with join -a ) , Extract Sequence From Fasta File Using Ids From A Separate File , ....