Question: Mapping of gene
0
gravatar for rakeshmbb
4.2 years ago by
rakeshmbb0
India
rakeshmbb0 wrote:

Hello everybody...I have co-ordinate of nearly 200 genes. I want to make a map using the co-ordinate. can anyone tell me how can I do that. Thanks in advance

gene genome • 1.0k views
ADD COMMENTlink modified 4.2 years ago by kozhaki.seq50 • written 4.2 years ago by rakeshmbb0

A map of what?

ADD REPLYlink written 4.2 years ago by andrew.j.skelton735.9k
Are you trying to map genes to coordinates?
ADD REPLYlink written 4.2 years ago by bioguy24190

Hi cmccabe.....I have coordinate of genes like below.

Chromosome 1
Gene1 4563246
Gene2 67453541
Gene3 67843736
gene4 546354387
..........................

Now I want to make a simple chromosome map to visualize these genes position.

ADD REPLYlink modified 21 days ago by RamRS25k • written 4.2 years ago by rakeshmbb0
0
gravatar for andrew.j.skelton73
4.2 years ago by
London
andrew.j.skelton735.9k wrote:

Check out this. The first few slides show how to make an ideogram, and they return ggplot2 objects (or that's extractable from a slot of the returned object). Because they return ggplot2 objects, for the relevant chromosome, you can mark the start sites you've got by using a vertical line.

ADD COMMENTlink modified 21 days ago by RamRS25k • written 4.2 years ago by andrew.j.skelton735.9k
0
gravatar for kozhaki.seq
4.2 years ago by
kozhaki.seq50
Korea, Republic Of
kozhaki.seq50 wrote:

You can use GenomePixelizer to map your genomes to chromosome. Unlike Circos, the tool generate linear chromosome image and the best thing is 'tool generates HTML codes which can be used for making clickable image on embedding some webpages.

ADD COMMENTlink modified 21 days ago by RamRS25k • written 4.2 years ago by kozhaki.seq50
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