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7.5 years ago
sunilthorat ▴ 30
Can anybody please help me in constructing phylogenetic tree using phangorn software on R. I am new to R and Phangorn please provide me basic steps to perform the construction of phylogenetic tree.
Thanks for sending me the link. I would be more thankful if you could help me in providing the steps in constructing a tree from my .fasta files or .ph/*.tre files using Phangorn.
Thanks in advance
You need a multiple sequence alignment as input as for almost any phylogenetics program. Search biostar for multiple sequence alignment. https://www.biostars.org/local/search/page/?q=multiple+sequence+alignment
I have MSA file in the form of .ph and also I converted it into .nex, .tre format. Now I want to use Phangorn to build a phylogenetic tree, can you please provide commands to do so.
Thanks in advance.